STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1608Putative nitroreductase oxidoreductase protein. (235 aa)    
Predicted Functional Partners:
RSc2019
Putative phenylacetic acid degradation-related signal peptide protein.
 
    0.581
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.561
RSc0165
Probable abc-type multidrug transport system, permease component abc transporter protein.
  
  
 0.475
RSc1975
Putative transmembrane permease abc transporter protein.
  
  
 0.475
RSc2955
Putative abc-type multidrug transport system, permease component abc transporter protein.
  
  
 0.475
RSp0693
Putative lactoylglutathione lyase and related lyases protein.
 
    0.472
RSc3402
Probable transmembrane protein.
  
  
 0.450
tadA
Putative cytosine/adenosine deaminase protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
  
  
 0.447
RSp1474
Miscellaneous; hypothetical/partial homology.
  
     0.439
alkK
Probable acyl-coa synthetase protein.
 
 
   0.437
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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