STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1610Probable transcription regulator protein. (266 aa)    
Predicted Functional Partners:
RSc0302
Probable transcription regulator protein.
  
     0.773
RSp0645
Probable transcription regulator protein.
   
  
 0.740
RSp0704
Probable transcription regulator protein.
  
     0.739
RSp0832
Probable gluconolactonase protein.
      0.646
RSc2755
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
      0.573
RSc0757
Putative transcription regulator protein.
  
     0.571
RSc2234
Probable transmembrane protein.
  
     0.507
RSp0436
Probable transcription regulator protein.
  
    0.492
RSc1611
Hypothetical protein of unknown function duf224.
  
    0.475
RSc3276
Probable transcription regulator protein.
  
    0.457
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.