STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1612Putative uncharacterized conserved protein containing a ferredoxin-like domain. (469 aa)    
Predicted Functional Partners:
RSc1032
Putative transmembrane protein.
 
 0.998
RSc1611
Hypothetical protein of unknown function duf224.
 
 0.998
RSc0454
Putative fe-s oxidoreductase fad/fmn-containing dehyfrogenase oxidoreductase protein.
  
 
 0.853
glcF
Probable glycolate oxidase (iron-sulfur subunit) protein.
 
 
 0.841
cobD-2
Putative cobalamin biosynthesis cobd-related transmembrane protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
      
 0.783
cobD
Probable cobalamin biosynthesis cobd transmembrane protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
      
 0.783
RSc1613
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.773
RSp0059
Putative alpha-helical ferredoxin; oxidoreductase protein.
  
 
 0.713
recO
Probable dna repair protein reco (recombination protein o); Involved in DNA repair and RecF pathway recombination.
      
 0.661
RSc1614
Probable transmembrane protein.
       0.578
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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