STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc1634Putative pha accumulation regulator dna-binding protein. (184 aa)    
Predicted Functional Partners:
phbC
Probable poly-beta-hydroxybutyrate polymerase transmembrane protein.
 
   
 0.906
phbB
Probable acetoacetyl-coa reductase oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.792
phaP1
Probable polyhydroxybutyrate granule-associated protein (phasin) phap1.
 
   
 0.723
phaP2
Probable polyhydroxybutyrate granule-associated protein (phasin) phap2.
 
   
 0.722
phaZ
Probable poly[d(-)-3-hydroxybutyrate] depolymerase protein.
 
   
 0.649
RSc0457
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
      0.646
phaP3
Probable polyhydroxybutyrate granule-associated protein (phasin) phap3.
 
   
 0.549
rimO
Putative 2-methylthioadenine synthetase protein; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
       0.547
RSc1598
Probable two-component transmembrane sensor histidine kinase transcription regulator protein.
  
     0.530
RSc1557
Probable transmembrane protein.
  
     0.475
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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