STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1651Conserved hypothetical protein; Miscellaneous; hypothetical/global homology. (394 aa)    
Predicted Functional Partners:
RSc1650
Probable signal peptide protein.
 
     0.936
RSp1575
Probable amino-acid-binding periplasmic (pbp) abc transporter protein.
      
 0.759
RSp1521
Putative type iv secretory pathway virj component-related protein.
      
 0.753
tatC
Putative sec-independent translocase protein tatc transmembrane; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
     
 0.732
acpA
Putative acid phosphatase protein.
  
     0.512
RSc1649
Putative transmembrane protein.
       0.506
RSp1173
Probable cytochrome c peroxidase transmembrane protein.
  
     0.488
RSp0929
Hypothetical signal peptide protein.
  
    0.476
RSc0450
Probable atp-sensitive inward rectifier potassium channel related transmembrane protein.
  
     0.439
aat
Leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.
 
     0.434
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.