STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1737Putative transmembrane outer membrane porin signal peptide protein. (353 aa)    
Predicted Functional Partners:
RSp0116
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
    0.755
RSc0317
Probable transmembrane protein.
  
     0.724
RSc0299
Putative prolin-rich signal peptide protein.
  
    0.681
RSp0337
Probable porin precursor transmembrane protein.
  
  
 
0.663
RSc2136
Probable porin signal peptide protein.
  
  
 
0.662
RSc1082
Probable outer membrane porin protein.
  
  
 
0.660
RSc2108
Probable porin signal peptide protein.
  
  
 
0.659
RSp0051
Probable porin signal peptide protein.
  
  
 
0.655
RSc2760
Probable ipr001702 outer membrane (porin) signal peptide protein.
  
  
 
0.651
RSc1236
Probable outer membrane protein (porin).
  
  
 
0.648
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.