STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livH1Putative amino acid transmembrane transmembrane protein; Belongs to the binding-protein-dependent transport system permease family. (315 aa)    
Predicted Functional Partners:
livM
Probable amino acid transport system permease lipoprotein transmembrane; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
livJ
Probable leu/ile/val-binding precursor signal peptide protein.
 
 
  0.991
RSc2247
Probable transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.987
RSc3340
Probable transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.986
RSp0015
Probable amino-acid transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.986
livG
Probable amino-acid atp-binding abc transporter protein.
  
 0.978
livF
Probable amino-acid atp-binding abc transporter protein.
 
  
 0.961
RSc2039
Probable permease transporter transmembrane protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.912
RSc2246
Probable atp-binding abc transporter protein.
  
 0.872
RSp0706
Probable amino-acid composite atp-binding transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.852
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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