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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pehBExo-poly-galacturonosidase signal peptide protein; Belongs to the glycosyl hydrolase 28 family. (702 aa)    
Predicted Functional Partners:
pehC
Polygalacturonase transmembrane protein; Belongs to the glycosyl hydrolase 28 family.
  
   
 0.936
pme
Pectinesterase precursor (pectin methylesterase) (pe). transmembrane protein; Involved in maceration and soft-rotting of plant tissue. Belongs to the pectinesterase family.
 
   
 0.873
egl
Endoglucanase precursor (endo-1,4-beta-glucanase)(cellulase) protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
     
 0.648
RSc1686
Probable phage hk022 gp9-related protein.
  
 
 0.620
RSc1682
Probable phage phi-105 orf25-like protein.
  
   0.612
garD
Probable d-galactarate dehydratase (d-galactarate dehydrogenase) protein.
 
     0.602
uxaA
Putative altronate hydrolase (altronic acid hydratase) protein.
 
     0.597
cbhA
Probable exoglucanase a (1,4-beta-cellobiosidase) protein; Belongs to the glycosyl hydrolase family 6.
     
 0.595
RSc1081
Probable glucosidase protein; Belongs to the glycosyl hydrolase 31 family.
 
     0.459
epsB
Putative tyrosine-protein kinase epsb (eps ipolysaccharide export epsb). transmembrane; Probably involved in polymerization and/or export of exopolysaccharide EPS I which functions as a virulence factor. May be involved in an ATP-dependent process in the pathway for EPS I production, possibly export of the trimeric repeat units across the inner membrane or their polymerization (By similarity).
     
 0.452
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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