STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1763Probable dehydrogenase oxidoreductase protein. (260 aa)    
Predicted Functional Partners:
RSp0697
Probable dehydrogenase/reductase oxidoreductase protein.
  
     0.772
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.749
RSc1764
Hypothetical phenylacetic acid degradation-related protein.
 
    0.739
RSc1762
Probable acyl-coa dehydrogenase oxidoreductase protein.
  
 0.698
RSp1422
Putative peptide synthetase protein.
  
 
 0.613
RSc1759
3-hydroxyacyl-CoA dehydrogenase; Probable trifunctonal: enoyl-coa hydratase and delta3-cis-delta2-trans-enoyl-coa isomerase and 3-hydroxyacyl-coa dehydrogenase oxidoreductase protein.
 
 0.595
RSc0442
Putative fatty-acid--coa ligase transmembrane protein.
 
  
   0.538
RSc1761
Probable acetyl-coa acetyltransferase protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
   0.501
fabD
Probable malonyl coa-[acyl-carrier-protein] transacylase.
 
 0.443
RSc1769
Probable oxidoreductase dehydrogenase signal peptide protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
0.434
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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