STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1765Probable 6-aminohexanoate-dimer hydrolase lipoprotein. (440 aa)    
Predicted Functional Partners:
RSc1766
Probable nadp-dependent oxidoreductase oxidoreductase protein.
       0.678
RSp0264
Putative beta-lactamase; protein.
  
     0.664
RSp0641
Probable non ribosomal peptide synthetase protein.
  
  
 0.623
RSp0263
Putative penicillin-binding protein, transpeptidase fold.
  
     0.611
gstG
Probable glutathione s-transferase protein.
 
     0.540
RSp1422
Putative peptide synthetase protein.
  
  
 0.540
scrA
Probable pts system, sucrose-specific (IIbc component) transmembrane protein.
  
  
 0.475
RSc1767
Putative epimerase/aldolase protein.
       0.471
RSc1764
Hypothetical phenylacetic acid degradation-related protein.
       0.459
RSc0055
Signal peptide protein; Putative dienelactone hydrolase and related enzymes / esterase/lipase/thioesterase;lipase, active site; signal peptide protein.
 
     0.452
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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