STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1767Putative epimerase/aldolase protein. (282 aa)    
Predicted Functional Partners:
gstG
Probable glutathione s-transferase protein.
 
     0.802
RSc1999
Putative citrate lyase beta subunit protein; Belongs to the HpcH/HpaI aldolase family.
   
    0.673
RSc1769
Probable oxidoreductase dehydrogenase signal peptide protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.540
RSc1766
Probable nadp-dependent oxidoreductase oxidoreductase protein.
  
    0.534
RSc1770
Putative hydrolase /ayltransferase (alpha/beta hydrolase superfamily) protein.
 
     0.513
dalK
Putative d-arabinitol kinase protein.
  
  
 0.498
RSc1765
Probable 6-aminohexanoate-dimer hydrolase lipoprotein.
       0.471
fruA
Probable pts system, fructose-specific IIbc component (eIIbc-fru) (fructose-permease IIbc component) transmembrane protein.
   
  
 0.446
RSc0257
Putative type III effector protein with ankyrin repeats.
  
 
 0.442
RSp0639
Probable zn-dependent hydrolase protein.
 
   
 0.418
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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