STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1775Probable hemagglutinin-related protein. (3165 aa)    
Predicted Functional Partners:
RSc0888
Probable activation/secretion protein.
 
 0.806
RSc1779
Probable activation/secretion signal peptide protein.
 
 0.806
RSp0550
Probable activation/secretion signal peptide protein.
 
 0.806
RSp1075
Probable activation/secretion protein.
 
 0.805
RSc3182
Probable activation/secretion signal peptide protein.
 
 
 0.800
RSp1535
Probable activation/secretion signal peptide protein.
 
 
 0.800
gspM
Probable general secretory pathway m transmembrane protein.
  
     0.677
gspH
Probable general secretory pathway h transmembrane protein.
  
     0.586
RSc1074
Probable signal peptide protein.
 
     0.564
RSp0116
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
   0.514
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.