STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1782Putative glycine cleavage t protein (aminomethyl transferase); Belongs to the GcvT family. (346 aa)    
Predicted Functional Partners:
iscA
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology; Belongs to the HesB/IscA family.
 
 
 0.817
erpA
Conserved hypothetical protein; Required for insertion of 4Fe-4S clusters.
 
 
 0.798
RSc1781
Putative glutathione s-transferase, protein.
       0.734
mltG
Putative aminodeoxychorismate lyase protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
       0.705
tmk
Probable thymidylate kinase (dtmp kinase) protein; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.705
holB
Probable dna polymerase III (delta' subunit) protein.
 
   
 0.674
RSc1780
Putative signal peptide protein.
       0.627
pilZ
Putative type 4 fimbrial biogenesis protein.
       0.547
RSc1787
Putative tatd-related deoxyribonuclease; protein.
       0.511
RSc1047
Probable protein of unknown function duf177.
  
     0.455
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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