STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1788Probable ankyrin repeat harboring signal peptide protein. (291 aa)    
Predicted Functional Partners:
RSc1787
Putative tatd-related deoxyribonuclease; protein.
       0.785
apaH
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
   
 0.777
RSc0781
Probable ankyrin repeat harboring signal peptide protein.
  
     0.774
RSc0257
Putative type III effector protein with ankyrin repeats.
  
     0.770
RSc1810
Probable polyketide synthase protein.
   
 0.754
RSp0216
Putative type III effector protein (serine/threonine-protein kinase).
    
 0.732
RSc3104
Probable calcium-binding signal peptide protein.
    
 0.701
RSc3358
Putative set domain protein; Miscellaneous; hypothetical/global homology.
  
 
 0.701
RSc0835
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
 0.670
RSc3235
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
 0.670
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.