STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc1790Probable transcription regulator protein. (360 aa)    
Predicted Functional Partners:
fruB
Probable multiphosphoryl transfer protein mtp.
 
 
 
 0.916
RSp1282
Probable pts system, fructose-specific eIIa/hpr/ei components protein.
 
 
 
 0.892
RSc1791
Probable solute-binding periplasmic (pbp) abc transporter protein.
 
   
 0.858
RSc1793
Probable permease transmembrane abc transporter protein.
 
   
 0.852
gltB
Probable glutamate synthase (large subunit) oxidoreductase protein.
    
 
 0.850
RSc1792
Probable transport system permease transmembrane abc transporter protein.
 
     0.842
cpdA
Putative phosphohydrolase or metallophosphoesterase protein; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes.
 
   
 0.824
RSc1794
Probable atp-binding abc transporter protein; Belongs to the ABC transporter superfamily.
 
     0.811
RSp1422
Putative peptide synthetase protein.
    
 
 0.801
rbsK
Putative ribokinase protein; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
 0.508
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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