STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc1800Probable lrr-gala family type III effector protein (gala 4). (462 aa)    
Predicted Functional Partners:
RSp0097
Probable ankyrin-repeat harboring protein.
  
     0.694
RSc0257
Putative type III effector protein with ankyrin repeats.
  
     0.634
popC
Type III effector protein popc; Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.
  
     0.574
RSc1801
Probable lrr-gala family type III effector protein (gala 5).
 
    
0.529
RSp0842
Putative leucine-rich-repeat type III effector protein.
  
     0.491
RSp0209
Probable hydroxylase protein.
  
     0.461
RSp1609
Probable acid sphingomyelinase-like phosphodiesterase transmembrane protein.
  
     0.459
pdhA
Probable pyruvate dehydrogenase e1 component (alpha subunit) oxidoreductase protein; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
  
    0.450
RSc1798
Putative pyruvate decarboxylase e1 (beta subunit) oxidoreductase protein.
       0.450
RSc1799
Putative dihydrolipoamide acetyltransferase (component e2 of pyruvate dehydrogenase complex) protein.
       0.450
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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