STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1801Probable lrr-gala family type III effector protein (gala 5). (538 aa)    
Predicted Functional Partners:
RSp0097
Probable ankyrin-repeat harboring protein.
 
     0.680
popC
Type III effector protein popc; Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.
  
     0.543
RSc1800
Probable lrr-gala family type III effector protein (gala 4).
 
    
0.529
RSc0257
Putative type III effector protein with ankyrin repeats.
 
     0.497
RSp0193
Putative type III effector protein with ppr repeats.
  
     0.491
RSp0842
Putative leucine-rich-repeat type III effector protein.
  
     0.481
RSp0209
Probable hydroxylase protein.
  
     0.477
RSp1609
Probable acid sphingomyelinase-like phosphodiesterase transmembrane protein.
  
     0.436
RSc2161
Heme chaperone HemW; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
     0.427
frr
Probable ribosome recycling factor (ribosome-releasing factor) (rrf) protein; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.
  
     0.417
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.