STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc1807Putative siderophore receptor protein. (691 aa)    
Predicted Functional Partners:
RSc2919
Putative iron transport-sensory transduction transmembrane protein.
 
  
 0.747
tonB
Probable tonb transmembrane protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.716
RSc0800
Putative ferrisiderophore receptor signal peptide protein.
  
  
 0.705
prhA
Outer membrane receptor prha signal peptide protein.
  
  
 0.680
RSc2778
Putative tonb-related transmembrane protein.
  
 
 0.669
RSp0100
Putative ferrisiderophore receptor protein.
  
     0.668
RSc1808
Probable composite atp-binding transmembrane abc transporter protein.
 
  
 0.633
RSc1809
Probable composite atp-binding transmembrane abc transporter protein.
 
  
 0.624
prhR
3-compartiment signal transduction system, component prhr transmembrane protein.
 
  
 0.617
RSp0415
Probable extracytoplasmic function sigma factor transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.597
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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