STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
brg11Probable avrbs3 family type III effector protein; Exported into plant cells, where it is targeted to the nucleus and probably acts as a transcription factor. Binds DNA in a sequence-specific manner. May contribute to plant pathogenicity. Belongs to the transcription activator-like effector (TALE) family. RipTAL/RTL subfamily. (1245 aa)    
Predicted Functional Partners:
RSc2365
Putative orn/lys/arg decarboxylase, c-terminal;chey-like; protein.
      
 0.830
RSc3252
Putative peptidase m, neutral zinc metallopeptidases, zinc-binding site; protein.
     
 0.634
pilA
Type 4 fimbrial pilin signal peptide protein; Belongs to the N-Me-Phe pilin family.
      
 0.632
RSc3437
Putative galactose mutarotase-like protein.
      
 0.632
mexC
Probable multidrug efflux system protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
      
 0.550
vsr
Probable patch repair protein (dna mismatch endonuclease); May nick specific sequences that contain T:G mispairs resulting from m5C-deamination.
      
 0.546
popP2
Type III effector protein popp2.
      
 0.542
hmsF
Putative hemin storage signal peptide protein.
      
 0.474
RSc1814
Hypothetical protein; Miscellaneous; unknown.
       0.466
RSc2691
Hypothetical protein; Miscellaneous; unknown.
   
    0.424
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.