STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iucDProbable l-lysine 6-monooxygenase (lysine n(6)-hydroxylase) oxidoreductase protein. (462 aa)    
Predicted Functional Partners:
RSp0422
Probable siderophore synthetase component protein.
  
 0.896
RSp0421
Probable siderophore synthetase component protein.
  
 0.874
RSp1422
Putative peptide synthetase protein.
  
 
 0.870
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.869
metG2
Probable methionyl-trna synthetase protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.814
RSc1819
Putative sugar-binding protein.
       0.773
RSc1806
Probable polyketide synthase protein.
 
 
 0.728
RSp0165
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
  
 0.703
RSp0640
Probable decoration of polyketide or non ribosomal peptide protein.
  
  
 0.703
RSp0419
Probable siderophore synthetase component protein.
 
  
 0.698
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.