STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
RSc1819Putative sugar-binding protein. (114 aa)    
Predicted Functional Partners:
iucD
Probable l-lysine 6-monooxygenase (lysine n(6)-hydroxylase) oxidoreductase protein.
     
 0.778
metG2
Probable methionyl-trna synthetase protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.774
RSp1008
Probable glycosyl transferase transmembrane protein.
  
  
 0.583
RSp0641
Probable non ribosomal peptide synthetase protein.
  
  
 0.567
RSc3062
Probable transcription regulator protein.
  
 
 0.506
RSc1806
Probable polyketide synthase protein.
  
  
 0.502
RSp1004
Probable dtdp-glucose 4,6-dehydratase transmembrane protein.
  
  
 0.497
epsB
Putative tyrosine-protein kinase epsb (eps ipolysaccharide export epsb). transmembrane; Probably involved in polymerization and/or export of exopolysaccharide EPS I which functions as a virulence factor. May be involved in an ATP-dependent process in the pathway for EPS I production, possibly export of the trimeric repeat units across the inner membrane or their polymerization (By similarity).
  
  
 0.490
ugd
Probable udp-glucose 6-dehydrogenase (ugd) oxidoreductase protein.
  
  
 0.445
rfbC
Probable dtdp-4-dehydrorhamnose 3,5-epimerase protein; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.428
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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