STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1819Putative sugar-binding protein. (114 aa)    
Predicted Functional Partners:
metG2
Probable methionyl-trna synthetase protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.775
iucD
Probable l-lysine 6-monooxygenase (lysine n(6)-hydroxylase) oxidoreductase protein.
       0.773
RSp1008
Probable glycosyl transferase transmembrane protein.
  
  
 0.597
RSp1004
Probable dtdp-glucose 4,6-dehydratase transmembrane protein.
  
  
 0.561
RSp0641
Probable non ribosomal peptide synthetase protein.
     
 0.511
ugd
Probable udp-glucose 6-dehydrogenase (ugd) oxidoreductase protein.
  
  
 0.508
RSc1806
Probable polyketide synthase protein.
     
 0.490
RSc3062
Probable transcription regulator protein.
  
 
 0.469
rfbA
Probable glucose-1-phosphate thymidylyltransferase protein; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.449
rfbC
Probable dtdp-4-dehydrorhamnose 3,5-epimerase protein; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.449
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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