STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc1824Putative hypothetical protein; Miscellaneous; hypothetical/global homology. (319 aa)    
Predicted Functional Partners:
RSc1825
Probable dioxygenase oxidoreductase protein.
   
 0.822
RSc1823
Hypothetical protein; Small molecule metabolism.
 
    0.607
RSc1826
Putative flavin oxidoreductase oxidoreductase protein.
  
  
 0.589
RSc1828
Putative indolepyruvate:ferredoxin oxidoreductase oxidoreductase protein.
 
     0.577
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
  
  
 0.573
maiA
Probable maleate cis-trans isomerase protein; Catalyzes cis-trans isomerization of the C2-C3 double bond in maleate to yield fumarate.
 
     0.562
RSc1827
Probable thioesterase protein.
       0.523
RSc1829
Putative indolepyruvate ferredoxin oxidoreductase oxidoreductase protein.
 
     0.439
RSp0119
Hypothetical of unknown function duf453; transmembrane protein.
  
    0.424
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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