STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1827Probable thioesterase protein. (148 aa)    
Predicted Functional Partners:
RSc1826
Putative flavin oxidoreductase oxidoreductase protein.
 
     0.944
RSc1828
Putative indolepyruvate:ferredoxin oxidoreductase oxidoreductase protein.
 
     0.918
ubiC
Putative chorismate lyase protein; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family.
    
 0.906
ubiA
Probable 4-hydroxybenzoate octaprenyltransferase transmembrane protein; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
     
 0.905
RSp0038
Probable thioesterase protein.
  
  
 
0.905
pobB
Probable 4-hydroxybenzoate 3-monooxygenase oxidoreductase protein.
     
  0.900
RSc1829
Putative indolepyruvate ferredoxin oxidoreductase oxidoreductase protein.
 
     0.807
RSp0035
Probable enoyl-coa hydratase protein; Belongs to the enoyl-CoA hydratase/isomerase family.
 
    0.788
RSp0037
Probable acetyl-coenzyme a synthetase (acetate--coa ligase) protein.
    0.779
RSp0032
Putative nadh:flavin oxidoreductases oxidoreductase protein.
 
     0.769
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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