STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1827Probable thioesterase protein. (148 aa)    
Predicted Functional Partners:
RSc1826
Putative flavin oxidoreductase oxidoreductase protein.
 
  
 0.946
RSc1828
Putative indolepyruvate:ferredoxin oxidoreductase oxidoreductase protein.
 
     0.919
ubiC
Putative chorismate lyase protein; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family.
    
 0.905
RSp0038
Probable thioesterase protein.
  
  
 
0.905
ubiA
Probable 4-hydroxybenzoate octaprenyltransferase transmembrane protein; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
     
 0.903
pobB
Probable 4-hydroxybenzoate 3-monooxygenase oxidoreductase protein.
     
  0.900
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.889
RSc1810
Probable polyketide synthase protein.
  
 
 0.881
RSc1829
Putative indolepyruvate ferredoxin oxidoreductase oxidoreductase protein.
 
     0.807
RSc1806
Probable polyketide synthase protein.
  
 
 0.783
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.