STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1828Putative indolepyruvate:ferredoxin oxidoreductase oxidoreductase protein. (503 aa)    
Predicted Functional Partners:
RSc1829
Putative indolepyruvate ferredoxin oxidoreductase oxidoreductase protein.
 
 
 0.936
RSc1827
Probable thioesterase protein.
 
     0.919
RSc1826
Putative flavin oxidoreductase oxidoreductase protein.
 
   
 0.899
RSc1825
Probable dioxygenase oxidoreductase protein.
 
     0.859
RSc1835
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.798
RSc1834
Putative phytoene dehydrogenase transmembrane protein.
 
     0.703
RSp0038
Probable thioesterase protein.
 
     0.634
RSc1824
Putative hypothetical protein; Miscellaneous; hypothetical/global homology.
 
   
 0.587
aroC
Probable chorismate synthase (5-enolpyruvylshikimate-3-phosphatephospholyase) protein; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
    
 
 0.576
RSp0032
Putative nadh:flavin oxidoreductases oxidoreductase protein.
  
   
 0.565
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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