STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1829Putative indolepyruvate ferredoxin oxidoreductase oxidoreductase protein. (738 aa)    
Predicted Functional Partners:
RSc1828
Putative indolepyruvate:ferredoxin oxidoreductase oxidoreductase protein.
 
 
 0.936
RSc1827
Probable thioesterase protein.
 
     0.807
RSc1835
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.788
RSc1825
Probable dioxygenase oxidoreductase protein.
 
     0.755
RSc1826
Putative flavin oxidoreductase oxidoreductase protein.
 
     0.726
sdhA
Putative succinate dehydrogenase (flavoprotein subunit) oxidoreductase; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 
 0.704
RSc1834
Putative phytoene dehydrogenase transmembrane protein.
 
     0.644
RSp0038
Probable thioesterase protein.
 
     0.598
tISRso10b
Isrso10-transposase orfb protein.
       0.576
tISRso10a-2
Isrso10-transposase orfa protein.
       0.576
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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