STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1834Putative phytoene dehydrogenase transmembrane protein. (535 aa)    
Predicted Functional Partners:
RSc1835
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.912
RSc1837
Putative nad-binding harboring; oxidoreductase protein.
 
  
 0.866
RSc1836
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.824
crtB
Putative phytoene synthase protein.
 
  
 0.797
RSc1838
Probable oxidoreductase protein.
 
   
 0.796
RSp0625
Probable magnesium chelatase (subunits dI protein.
  
  
 0.778
RSc1828
Putative indolepyruvate:ferredoxin oxidoreductase oxidoreductase protein.
 
     0.702
RSp0404
Probable transmembrane protein.
  
  
 0.691
RSc1833
Probable cog4313, involved in meta-pathway of phenol degradation signal peptide protein.
 
     0.680
RSc1829
Putative indolepyruvate ferredoxin oxidoreductase oxidoreductase protein.
 
     0.643
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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