STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1835Conserved hypothetical protein; Miscellaneous; hypothetical/global homology. (263 aa)    
Predicted Functional Partners:
RSc1834
Putative phytoene dehydrogenase transmembrane protein.
 
     0.912
RSc1828
Putative indolepyruvate:ferredoxin oxidoreductase oxidoreductase protein.
 
     0.797
RSc1829
Putative indolepyruvate ferredoxin oxidoreductase oxidoreductase protein.
 
     0.787
RSc1837
Putative nad-binding harboring; oxidoreductase protein.
 
     0.782
kynU
Probable kynureninase protein; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
  
  
 0.760
RSc1836
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.697
kynB
Probable kynurenine formidase protein; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation.
  
   
 0.672
RSc0083
Hypothetical protein of unknown function duf849, prokaryotic.
  
  
 0.660
RSc1838
Probable oxidoreductase protein.
 
  
 0.653
dapE
Probable succinyl-diaminopimelate desuccinylase protein; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
     
 0.635
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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