STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1836Conserved hypothetical protein; Miscellaneous; hypothetical/global homology. (183 aa)    
Predicted Functional Partners:
RSc1837
Putative nad-binding harboring; oxidoreductase protein.
  
 0.948
RSc1834
Putative phytoene dehydrogenase transmembrane protein.
 
     0.826
RSc1835
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.698
RSc1838
Probable oxidoreductase protein.
 
     0.678
RSp1227
Probable flavin-dependent oxidoreductases oxidoreductase protein.
 
  
 0.557
RSp0641
Probable non ribosomal peptide synthetase protein.
  
  
 0.463
RSc1833
Probable cog4313, involved in meta-pathway of phenol degradation signal peptide protein.
       0.453
ribAB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
  
 0.401
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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