STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc1840Putative aminotransferase protein. (292 aa)    
Predicted Functional Partners:
aspC
Probable aspartate aminotransferase protein.
 
  
 0.937
metC
Putative cystathionine beta-lyase (cysteine lyase) protein.
 
 
 0.934
RSp0781
Probable cystathionine beta-lyases/cystathionine gamma-synthases protein.
  
 
 0.933
RSp1583
Probable o-acetylhomoserine sulfhydrylase transmembrane protein.
   
 0.923
metY
Probable o-acetylhomoserine (thiol)-lyase (methionine/homocysteine synthase) protein.
   
 0.919
aatA1
Probable aspartate aminotransferase a protein.
 
  
0.918
aatA2
Probable aspartate aminotransferase a protein.
 
  
0.917
cysK1
Probable cysteine synthase a protein.
    
 0.915
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
    
 0.912
metHb
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.911
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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