STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1878Putative lipoprotein. (200 aa)    
Predicted Functional Partners:
RSp1666
Probable signal peptide protein.
   
    0.650
glmS
Glutamine--fructose-6-phosphate aminotransferase [isomerizing]; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
   
    0.511
epsA
epsIpolysaccharide export outer membrane epsa precursor. transmembrane protein; Probably involved in polymerization and/or export of exopolysaccharide EPS I which functions as a virulence factor. Belongs to the BexD/CtrA/VexA family.
   
    0.504
RSp1175
Hypothetical protein of unknown function duf1458.
   
    0.497
RSc1877
Probable aspartyl/asparaginyl beta-hydroxylase transmembrane protein.
 
     0.478
RSc1881
Hypothetical transmembrane protein.
 
     0.452
RSc2562
Probable transmembrane protein.
  
     0.442
RSc0601
Probable transmembrane protein.
  
     0.438
RSc1879
Probable abc-type branched-chain amino acid transport systems, periplasmic component abc transporter protein.
       0.429
RSc1355
Hypothetical protein of unknown function upf0131.
  
     0.408
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.