STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1896Putative integrase prophage protein; Belongs to the 'phage' integrase family. (411 aa)    
Predicted Functional Partners:
RSc1944
Putative vgr-related protein.
      
 0.815
RSc0962
Putative bacteriophage dna-binding transcription regulator protein.
 
  
 0.777
RSc1494
Putative integrase-like protein; Belongs to the 'phage' integrase family.
  
     0.773
int
Integrase-tyrosine recombinase protein; Belongs to the 'phage' integrase family.
  
     0.599
RSc1942
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
      
 0.549
RSc1943
Probable transmembrane protein.
      
 0.549
RSc0958
Putative vgr-related protein.
      
 0.546
RSp0103
Putative vgr-related protein.
      
 0.546
RSc2483
Hypothetical toprim subdomain harboring protein related to dna primases.
 
     0.538
RSc1865
Putative dna primase-related protein.
 
     0.535
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.