STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1961Putative aaa atpase; protein. (771 aa)    
Predicted Functional Partners:
dnaN
Probable dna polymerase III (beta chain) protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required f [...]
  
 
 0.897
RSc1656
Miscellaneous; hypothetical/partial homology.
   
 
 0.878
RSc0456
Probable atp-binding transport abc transporter protein.
     
 0.828
holB
Probable dna polymerase III (delta' subunit) protein.
   
 0.817
RSc1606
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
 
 0.801
glpK
Probable glycerol kinase (atp:glycerol 3-phosphotransferase)(glycerokinase) (gk) protein; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
  
  0.791
RSp0216
Putative type III effector protein (serine/threonine-protein kinase).
   
 0.784
RSc0919
Putative deacetylase protein.
   
 0.755
alc
Probable allantoicase (allantoate amidinohydrolase) protein; Belongs to the allantoicase family.
   
 
 0.733
RSc0024
Putative signal peptide protein.
 
 
 0.689
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.