STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
osmB1Putative osmotically inducible lipoprotein b1 transmembrane. (66 aa)    
Predicted Functional Partners:
RSc1651
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
   
    0.578
RSc1584
Putative transcription regulator protein.
   
    0.561
RSp1666
Probable signal peptide protein.
   
    0.541
flgE
Probable flagellar hook protein flge.
   
 
 0.540
flgC
Probable flagellar basal-body rod protein flgc; Belongs to the flagella basal body rod proteins family.
   
   0.526
RSc1413
Probable outer membrane chaperone, skp-related transmembrane protein; Belongs to the skp family.
  
 
 0.501
RSc1969
Probable transmembrane protein.
   
    0.484
RSc2910
Probable signal peptide protein.
   
    0.484
RSp0708
Probable signal peptide protein.
   
    0.484
nodI
Probable atp-binding abc transporter protein; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.
     
 0.480
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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