STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
nodIProbable atp-binding abc transporter protein; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system. (321 aa)    
Predicted Functional Partners:
RSc1975
Putative transmembrane permease abc transporter protein.
 
 
 0.994
RSc0165
Probable abc-type multidrug transport system, permease component abc transporter protein.
  
 0.955
dppD2
Probable oligopeptide atp-binding abc transporter protein; Belongs to the ABC transporter superfamily.
     
0.769
RSp0015
Probable amino-acid transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
      0.694
nosY
Probable nosy transmembrane protein.
  
 
 0.693
RSc3340
Probable transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
    
 0.653
RSc2955
Putative abc-type multidrug transport system, permease component abc transporter protein.
  
 0.618
nosR
Probable transmembrane regulatory nosr transcription regulator protein.
  
  
 0.574
RSp0641
Probable non ribosomal peptide synthetase protein.
  
  
 0.527
atpD
Probable atp synthase beta chain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 
 0.482
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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