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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1975Putative transmembrane permease abc transporter protein. (274 aa)    
Predicted Functional Partners:
nodI
Probable atp-binding abc transporter protein; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.
 
 
 0.992
RSc2956
Probable atp-binding abc transporter protein.
 
  
 0.611
RSc3402
Probable transmembrane protein.
  
  
 0.508
RSc0164
Probable atp-binding abc transporter protein.
  
  
 0.470
nosF
Probable abc-type copper transport system, atpase component abc transporter protein.
  
  
 0.470
RSc2955
Putative abc-type multidrug transport system, permease component abc transporter protein.
  
  
 
0.456
RSc0150
Putative nitroreductase; protein.
  
  
 0.441
RSc0645
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
  
 0.441
RSc0821
Putative nadph nitroreductase protein.
  
  
 0.441
RSc1004
Probable nad(p)h nitroreductase protein.
  
  
 0.441
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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