STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2006Probable extracellular solute-binding, family 5 abc transporter protein. (528 aa)    
Predicted Functional Partners:
RSc1381
Probable transmembrane abc transporter protein.
 
 0.942
dppB2
Probable dipeptide transmembrane abc transporter protein.
 
 0.934
dppB1
Probable transmembrane (dipeptide transport system permease) abc transporter protein.
 
 0.930
dppC1
Probable dipeptide transport system permease transmembrane protein.
 
 0.916
RSc1382
Probable transmembrane abc transporter protein.
 
 0.909
dppC2
Probable dipeptide transmembrane abc transporter protein.
 
 
 0.906
dppF1
Probable oligopeptide atp-binding abc transporter protein; Belongs to the ABC transporter superfamily.
 
 
 0.855
dppD2
Probable oligopeptide atp-binding abc transporter protein; Belongs to the ABC transporter superfamily.
 
 
 0.851
dppD1
Probable oligopeptide atp-binding abc transporter protein; Belongs to the ABC transporter superfamily.
 
 
 0.851
dppF2
Probable oligopeptide atp-binding abc transporter protein; Belongs to the ABC transporter superfamily.
 
 
 0.846
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.