STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2011Putative aspartate/tyrosine/aromatic aminotransferase protein. (399 aa)    
Predicted Functional Partners:
RSc2010
Hypothetical nucleotide binding protein4.
 
     0.706
xdhB
Probable xanthine dehydrogenase (subunit b) oxidoreductase protein.
 
 
  
 0.688
RSp0641
Probable non ribosomal peptide synthetase protein.
  
  
 0.539
RSc1469
Probable oxidoreductase oxidoreductase protein.
 
      0.538
gltB
Probable glutamate synthase (large subunit) oxidoreductase protein.
     
 0.502
RSc2009
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology; Belongs to the UPF0246 family.
       0.484
pheA
Probable bifunctional protein: chorismate mutase and prephenate dehydratase.
 
  
 0.481
RSc2008
Putative carboxypeptidase protein.
  
    0.441
RSc1806
Probable polyketide synthase protein.
  
 
 0.437
RSc2329
Putative nad(p)h dehydrogenase (quinone); protein.
   
    0.426
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.