STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2019Putative phenylacetic acid degradation-related signal peptide protein. (166 aa)    
Predicted Functional Partners:
RSc2020
Probable acyl-coa dehydrogenase oxidoreductase protein.
  
  
 0.713
RSp1422
Putative peptide synthetase protein.
  
 
 0.700
RSc2018
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
 
     0.619
RSc2595
Conserved hypothetical protein with dimeric alpha-beta barrel.
 
     0.588
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.585
RSc1608
Putative nitroreductase oxidoreductase protein.
 
    0.579
RSc2045
Probable acyl-coa dehydrogenase oxidoreductase protein.
 
  
 0.529
RSc1806
Probable polyketide synthase protein.
  
 
 0.526
RSc0281
Putative beta-lactamase-like protein.
 
    0.503
plsX
Probable fatty acid/phospholipid synthesis protein plsx; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.
  
  
 0.492
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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