STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2038Probable atp-binding abc transporter protein. (287 aa)    
Predicted Functional Partners:
RSc2039
Probable permease transporter transmembrane protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
RSc2040
Probable permease transporter transmembrane protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.997
RSc2037
Probable atp-binding abc transporter protein.
 
0.996
RSc2041
Urea transport system substrate-binding protein; Probable abc-type branched-chain amino acid transport systems, periplasmic component harboring a twin-arginine translocation pathway signal; abc transporter protein.
 
 
 0.994
RSp0015
Probable amino-acid transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.949
RSc3340
Probable transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.939
RSc2247
Probable transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.924
RSc2439
Probable amino-acid transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.898
livM
Probable amino acid transport system permease lipoprotein transmembrane; Belongs to the binding-protein-dependent transport system permease family.
  
 0.888
ureD
Probable urease accessory protein ured; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
   
 0.880
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.