STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2065Putative nadph quinone oxidoreductase oxidoreductase protein. (334 aa)    
Predicted Functional Partners:
RSc1806
Probable polyketide synthase protein.
 
 
 0.913
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.900
RSc2066
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.732
fabF1
Probable 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
    0.724
RSc1810
Probable polyketide synthase protein.
 
 
 0.696
fabD
Probable malonyl coa-[acyl-carrier-protein] transacylase.
 
    
 0.686
tpiA
Probable triosephosphate isomerase (tim) (triose-phosphateisomerase) protein; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
     
 0.684
pnp
Probable polyribonucleotide nucleotidyltransferase protein; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
       0.665
RSc0636
Probable truncated oxidoreductase (n-terminal part) protein.
 
     0.655
RSp1419
Putative peptide synthase protein.
 
 
 0.646
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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