STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2070Probable transporter signal peptide protein. (418 aa)    
Predicted Functional Partners:
livM
Probable amino acid transport system permease lipoprotein transmembrane; Belongs to the binding-protein-dependent transport system permease family.
 
    0.855
livH1
Putative amino acid transmembrane transmembrane protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.836
livG
Probable amino-acid atp-binding abc transporter protein.
 
    0.827
livF
Probable amino-acid atp-binding abc transporter protein.
 
    0.731
RSp0706
Probable amino-acid composite atp-binding transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.715
RSc2071
Probable transmembrane protein.
       0.546
RSc2765
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.539
RSc2247
Probable transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.505
RSc2039
Probable permease transporter transmembrane protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.479
rpsO
Probable 30s ribosomal subunit protein s15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
       0.475
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.