STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2082Putative lipase transmembrane protein. (339 aa)    
Predicted Functional Partners:
RSc2081
Probable transmembrane protein.
       0.692
RSc0792
Putative lipase chaperone protein.
  
 
 0.594
RSc0317
Probable transmembrane protein.
  
     0.556
RSp0660
Probable porin protein.
  
    0.551
RSc0472
Putative transcription regulator protein.
  
     0.541
RSc2655
Probable transmembrane protein.
  
     0.529
RSc2080
Probable transmembrane protein.
 
     0.528
RSc1259
Putative signal peptide protein.
  
     0.522
RSc0176
Probable lipoprotein.
  
     0.496
RSc2078
Probable rna polymerase sigma factor transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
       0.458
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.