STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2087Conserved hypothetical protein 730; Miscellaneous; hypothetical/global homology; Belongs to the LOG family. (194 aa)    
Predicted Functional Partners:
RSc2086
Putative transcription regulator protein.
       0.810
hemK
Probable methylase of polypeptide chain release factors protein; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
      0.731
dgkA
Probable diacylglycerol kinase transmembrane protein; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.
       0.649
RSc2084
Putative glycosyl transferase, group 1 protein.
     
 0.510
RSc2088
Putative exporter transmembrane protein.
       0.488
RSc2081
Probable transmembrane protein.
       0.473
nrdB
Putative transmembrane ribonucleoside reductase (small chain) oxidoreductase protein; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.
  
    0.451
RSc2078
Probable rna polymerase sigma factor transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
       0.423
RSc2079
Probable transmembrane protein.
       0.423
gltB
Probable glutamate synthase (large subunit) oxidoreductase protein.
  
    0.420
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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