STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2091Probable cog3127, predicted abc-type transport system involved in lysophospholipase l1 biosynthesis, permease component abc transporter protein. (843 aa)    
Predicted Functional Partners:
RSc1717
Probable esterase signal peptide protein.
 
 
   0.910
RSc1718
Probable atp-binding abc transporter protein.
 
 
 
 0.871
RSc2090
Putative oxygen-binding protein (globin).
 
     0.820
RSc2089
Putative transmembrane protein.
       0.608
RSc2092
Putative transcription regulator protein.
       0.605
RSc2467
Probable transmembrane protein.
 
     0.453
RSp1245
Putative arylesterase protein.
   
   0.445
RSc2093
Probable abc-type tungstate transport system, permease component abc transporter protein.
       0.425
RSp0641
Probable non ribosomal peptide synthetase protein.
     
 0.403
RSc0932
Probable soluble quinoprotein glucose dehydrogenase; oxidoreductase.
  
     0.402
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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