STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2102Probable transcription regulator protein. (254 aa)    
Predicted Functional Partners:
RSp0436
Probable transcription regulator protein.
  
  
 0.783
RSc2103
Probable amino-acid-binding periplasmic (pbp) abc transporter protein; Belongs to the bacterial solute-binding protein 3 family.
       0.773
RSc3276
Probable transcription regulator protein.
  
  
 0.735
RSc2117
Probable transcription regulator protein.
  
  
 0.618
RSc2104
Probable amino-acid transmembrane abc transporter protein.
       0.588
RSc2105
Probable amino-acid transmembrane abc transporter protein.
       0.588
RSc2106
Probable amino-acid atp-binding abc transporter protein.
       0.588
RSc0302
Probable transcription regulator protein.
 
  
 0.527
RSc3411
Probable transcription regulator protein.
 
  
 0.473
RSp0641
Probable non ribosomal peptide synthetase protein.
   
 
 0.461
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.