STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rslFucose-binding lectin protein. (91 aa)    
Predicted Functional Partners:
rfaC1
Probable lipopolysaccharide heptosyltransferase protein.
      
 0.631
rfaC2
Probable lipopolysaccharide heptosyltransferase protein.
      
 0.631
def2
Putative peptide deformylase 2 (pdf 2) (polypeptide deformylase2) protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
      
 0.550
birA
Putative bifunctional protein: biotin operon repressor and biotin--[acetyl-coa-carboxylase] synthetase.
      
 0.548
RSc0629
Putative oxidoreductase cytochrome c552 precursor signal peptide protein.
      
 0.460
RSc3260
Probable cytochrome c551/c552 transmembrane protein.
      
 0.460
sseA
Probable thiosulfate sulfurtransferase protein.
      
 0.432
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.