STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2109Probable transmembrane protein. (316 aa)    
Predicted Functional Partners:
RSp0902
Putative integrase/recombinase protein; Belongs to the 'phage' integrase family.
  
     0.541
RSc2111
Probable dihydrodipicolinate synthase (dhdps) protein; Belongs to the DapA family.
       0.512
aldH
Probable aldehyde dehydrogenase oxidoreductase protein; Belongs to the aldehyde dehydrogenase family.
       0.511
RSc3278
Probable transcription regulator protein.
  
     0.499
RSc1400
Putative transmembrane protein.
  
     0.479
RSc2108
Probable porin signal peptide protein.
       0.437
RSp1617
Putative cog1475 transcription regulator transcription regulator protein.
  
     0.429
RSc1316
Putative phoh-like protein.
   
    0.402
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.