STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
dalRPutative transcriptional regulator (repressor) transcription regulator protein. (315 aa)    
Predicted Functional Partners:
dalK
Putative d-arabinitol kinase protein.
 
  
 0.869
RSc2144
Probable sugar-binding periplasmic signal peptide protein.
 
   
 0.757
dalD
Putative d-arabinitol 4-dehydrogenase. oxidoreductase protein; Belongs to the mannitol dehydrogenase family.
 
   
 0.753
RSc2142
Probable transmembrane abc transporter protein.
 
   
 0.705
RSc2143
Probable transmembrane abc transporter protein.
 
   
 0.650
RSp1282
Probable pts system, fructose-specific eIIa/hpr/ei components protein.
 
  
 0.504
araF
Probable l-arabinose-binding periplasmic (pbp) abc transporter protein; Belongs to the bacterial solute-binding protein 2 family.
 
  
 0.486
fruB
Probable multiphosphoryl transfer protein mtp.
  
  
 0.455
iolC
Probable transferase kinase protein.
 
   
 0.443
gapA
Probable glyceraldehyde-3-phosphate dehydrogenase (gapdh). oxidoreductase protein; Catalyzes the oxidative phosphorylation of glyceraldehyde 3- phosphate (G3P) to 1,3-bisphosphoglycerate (BPG) using the cofactor NAD. The first reaction step involves the formation of a hemiacetal intermediate between G3P and a cysteine residue, and this hemiacetal intermediate is then oxidized to a thioester, with concomitant reduction of NAD to NADH. The reduced NADH is then exchanged with the second NAD, and the thioester is attacked by a nucleophilic inorganic phosphate to produce BPG.
  
  
 0.425
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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