STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2140Probable sugar atp-binding abc transporter protein; Belongs to the ABC transporter superfamily. (369 aa)    
Predicted Functional Partners:
RSc2143
Probable transmembrane abc transporter protein.
 
 0.995
RSc2142
Probable transmembrane abc transporter protein.
 
 0.993
RSc2144
Probable sugar-binding periplasmic signal peptide protein.
 
 0.973
ugpE
Probable sn-glycerol-3-phosphate transmembrane abc transporter protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
 0.956
ugpA
Probable sn-glycerol-3-phosphate transmembrane abc transporter protein.
 
 
 0.941
RSc1809
Probable composite atp-binding transmembrane abc transporter protein.
 
    
0.896
RSc3048
Probable sugar abc transporter, permease abc transporter protein.
 
 
 0.854
RSc3049
Probable transmembrane abc transporter protein.
 
 
 0.837
ugpB
Probable glycerol-3-phosphate-binding periplasmic lipoprotein signal peptide.
 
 
 0.817
RSp1144
Probable abc-type molybdate transport system, permease component abc transporter protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
     0.802
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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