STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2144Probable sugar-binding periplasmic signal peptide protein. (441 aa)    
Predicted Functional Partners:
RSc2143
Probable transmembrane abc transporter protein.
 0.997
RSc2142
Probable transmembrane abc transporter protein.
 
 0.994
RSc2140
Probable sugar atp-binding abc transporter protein; Belongs to the ABC transporter superfamily.
 
 0.973
sorD
Probable sorbitol dehydrogenase (l-iditol 2-dehydrogenase) oxidoreductase protein.
 
     0.830
RSc3048
Probable sugar abc transporter, permease abc transporter protein.
 
 
 0.797
RSc3049
Probable transmembrane abc transporter protein.
 
 
 0.779
ugpA
Probable sn-glycerol-3-phosphate transmembrane abc transporter protein.
  
 
 0.773
dalD
Putative d-arabinitol 4-dehydrogenase. oxidoreductase protein; Belongs to the mannitol dehydrogenase family.
 
  
 0.758
dalR
Putative transcriptional regulator (repressor) transcription regulator protein.
 
   
 0.757
ugpE
Probable sn-glycerol-3-phosphate transmembrane abc transporter protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
  
 
 0.741
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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